Species	Tissue	CellType	Marker	Resource
Mouse	Cerebral cortex	Astrocyte	Apoe, Slc1a3, Aldh1l1, Aldoc, Bcan, Egfr, Fgfr3, Gja1, Grm3, Grm5, Id3, Insm1, Itga6, Mycn, Olig1, Olig2	34163074, 33606177, 33452227, 32139688
Mouse	Cerebral cortex	Cajal-Retzius cell	Reln	34163074
Mouse	Cerebral cortex	Callosal projection neuron	Satb2, Cux1, Cux2, Cdh13, Gnb4, Igsf21, Plxna4, Pou3f3, Ptprk, Rorb	34163074
Mouse	Cerebral cortex	Caudal ganglionic eminence derived GABAergic cortical interneuron	Cxcl14, Htr3a, Pax6, Sp8	34163074
Mouse	Cerebral cortex	Cerebral cortex pyramidal neuron	Bcl11a, Emx1, Lhx2, Neurod2, Neurod6	33606177
Mouse	Cerebral cortex	Endothelial cell	Cldn5, Ly6c1, Mcam	34163074, 33452227
Mouse	Cerebral cortex	Ependymal cell	Foxj1, Anxa2, Cryab, Enkur, Itih5, Lgals3, Ogn, Prom1, S100a11, Tspan15	34163074, 33606177
Mouse	Cerebral cortex	Erythrocyte	Car2, Hba-a1, Hba-a2, Hba-x, Hbb-bh1, Hbb-bs, Hbb-bt, Hbb-y, Hbq1b, Hemgn	34163074
Mouse	Cerebral cortex	Excitatory neuron	Fezf2, Neurod2, Satb2	34163074
Mouse	Cerebral cortex	Glial cell	Apoe	34163074
Mouse	Cerebral cortex	Homeostatic microglial cell	Csf1r, Cx3cr1, P2ry12, Tmem119	33718838
Mouse	Cerebral cortex	Inhibitory interneuron	Gad1, Dlx2, Gad2	34163074, 33452227
Mouse	Cerebral cortex	Interneuron	Etv1, Meis2, Sp8	34163074
Mouse	Cerebral cortex	Mature microglial cell	Cd74, Clec7a, Cst7, Ctsb, Ctsd, Dkk2, Gpnmb, H2-Aa, H2-Ab1, Itgax, Spp1	31018141
Mouse	Cerebral cortex	Medial ganglionic eminence derived GABAergic cortical interneuron	Lhx6, Npy, Nxph1, Nxph2, Sst	34163074
Mouse	Cerebral cortex	Mesenchymal cell	Col10a1, Col11a1, Col11a2, Col12a1, Col13a1, Col14a1, Col15a1, Col16a1, Col18a1, Col19a1, Col1a1, Col1a2, Col20a1, Col22a1, Col23a1, Col24a1, Col25a1, Col26a1, Col27a1, Col28a1, Col2a1, Col3a1, Col4a1, Col4a2, Col4a3, Col4a4, Col4a5, Col4a6, Col5a1, Col5a2, Col5a3, Col6a1, Col6a2, Col6a3, Col6a5, Col6a6, Col7a1, Col8a1, Col8a2, Col9a1, Col9a2, Col9a3	32903255
Mouse	Cerebral cortex	Microglial cell	Tmem119, Cx3cr1, P2ry12, Aif1, Cst7, Ctsb, Ctsd, Itgax, C1qa, C1qb, C1qc, Ccl3, Ccl4, Cd74, Cdk1, Clec7a, Fabp5, Fth1, H2-Aa, H2-Ab1, Ifit2, Ifit3, Ifitm3, Igf1, Il1a, Il1b, Irf7, Lpl, Lyz2, Mcm2, Mki67, Oasl2, Spp1, Top2a, Tubb5	33718838, 34163074, 32903255, 31018141, 33452227
Mouse	Cerebral cortex	Neuron	Fezf2, Tle4, Bcl11b, Pcp4, Tubb3, Bhlhe22, Camk2n1, Foxp2, Gria2, Kif5a, Ldb2, Mef2c, Meg3, Nrp1, Pex5l, Reln, Rorb, Satb2, Sox5, Tbr1, Tcerg1l, Thy1, Tshz2	34163074, 32903255, 33452227
Mouse	Cerebral cortex	Olfactory bulb interneuron	Arx, Cdk1, Etv1, Gad1, Gad2, Mki67, Pax6, Pbx3, Top2a	33606177
Mouse	Cerebral cortex	Oligodendrocyte	Ascl1, C1ql1, Chd7, Chd8, Cnp, Cspg4, Dll1, Dll3, Egfr, Olig1, Olig2, Pcdh15, Pdgfra, Plp1, S100b, Sox10	33606177, 33452227
Mouse	Cerebral cortex	Oligodendrocyte precursor cell	Olig1, Olig2, Pdgfra, Ascl1, Sox10	34163074, 33606177
Mouse	Cerebral cortex	Pericyte	Cspg4, Pdgfrb	34163074
Mouse	Cerebral cortex	Progenitor cell	Eomes, Pax6, Sox2, Aldoc, Apoe, Ascl1, Bcan, Btg2, Egfr, Gadd45g, Hes1, Hes5, Insm1, Mfap4, Mki67, Mycn, Neurog2, Slc1a3, Sstr2	34163074, 32903255, 33606177
Mouse	Cerebral cortex	Pyramidal neuron	App, Neurod2, Neurod6, Thy1, Tubb3	34163074, 33452227
Mouse	Cerebral cortex	Radial glial cell	Slc1a3, Aldoc, Apoe, Bcan, Dbi, Emx1, Fabp7, Fezf2, Gfap, Gli3, Hopx, Naaa, Nkain4, Vim	34163074, 32903255, 33606177
Mouse	Cerebral cortex	Vascular leptomeningeal cell	Col1a1, Lgals1, Vtn	34163074